nilearn.masking: Data Masking Utilities

Utilities to compute and operate on brain masks.

User guide: See the Masking the data: from 4D image to 2D array section for further details.

Functions

compute_epi_mask(epi_img[, lower_cutoff, ...])	Compute a brain mask from fMRI data in 3D or 4D numpy.ndarray.
compute_multi_epi_mask(epi_imgs[, ...])	Compute a common mask for several runs or subjects of fMRI data.
compute_brain_mask(target_img[, threshold, ...])	Compute the whole-brain, grey-matter or white-matter mask.
compute_multi_brain_mask(target_imgs[, ...])	Compute the whole-brain, grey-matter or white-matter mask for a list of images.
compute_background_mask(data_imgs[, ...])	Compute a brain mask for the images by guessing the value of the background from the border of the image.
compute_multi_background_mask(data_imgs[, ...])	Compute a common mask for several runs or subjects of data.
intersect_masks(mask_imgs[, threshold, ...])	Compute intersection of several masks.
apply_mask(imgs, mask_img[, dtype, ...])	Extract signals from images using specified mask.
unmask(X, mask_img[, order])	Take masked data and bring them back into 3D/4D.