Manipulating brain image volumes

See Manipulating images: resampling, smoothing, masking, ROIs… for more details.

Breaking an atlas of labels in separated regions

Breaking an atlas of labels in separated regions

Comparing the means of 2 images

Comparing the means of 2 images

Computing a Region of Interest (ROI) mask manually

Computing a Region of Interest (ROI) mask manually

Extracting signals from brain regions using the NiftiLabelsMasker

Extracting signals from brain regions using the NiftiLabelsMasker

Image thresholding

Image thresholding

Negating an image with math_img

Negating an image with math_img

Region Extraction using a t-statistical map (3D)

Region Extraction using a t-statistical map (3D)

Regions Extraction of Default Mode Networks

Regions Extraction of Default Mode Networks

Resample an image to a template

Resample an image to a template

Simple example of NiftiMasker use

Simple example of NiftiMasker use

Smoothing an image

Smoothing an image

Understanding NiftiMasker and mask computation

Understanding NiftiMasker and mask computation

Visualization of affine resamplings

Visualization of affine resamplings