Examples of GLM reports

First level report

ADHD

Adapted from Default Mode Network extraction of ADHD dataset

ADHD DMN Report

ADHD DMN Report

First Level Model

Model details:

drift_model cosine
drift_order 1
high_pass (Hz) 0.01
hrf_model glover
noise_model ar1
scaling_axis 0
signal_scaling 0
slice_time_ref 0.0
smoothing_fwhm None
standardize False
subject_label None
t_r (s) 2.0
target_affine None
target_shape None

Design Matrix:

Plot of Design Matrix used in Run 1.

Contrasts

Plot of the contrast: seed_based_glm.

Mask

Model did not supply a mask image.

Stat Maps with Cluster Tables

seed_based_glm

Stat map plot for the contrast: seed_based_glm
Contrast Plot Plot of the contrast: seed_based_glm.

Cluster Table
Height control bonferroni
α 9.00E-4
Threshold (computed) 5.669
Cluster size threshold (voxels) 15
Minimum distance (mm) 8.0

Cluster ID X Y Z Peak Stat Cluster Size (mm3)
1 3.0 -54.0 18.0 13.01 12393
1a 0.0 -57.0 30.0 12.68
1b 0.0 -48.0 30.0 11.96
1c -3.0 -51.0 18.0 11.91
2 0.0 51.0 -6.0 11.08 5562
2a 3.0 69.0 3.0 10.62
2b 0.0 57.0 3.0 10.31
2c 0.0 63.0 15.0 10.12
3 57.0 -66.0 27.0 10.91 1188
3a 48.0 -57.0 30.0 8.99
3b 51.0 -69.0 27.0 8.51
4 6.0 -84.0 -18.0 10.71 756
4a -3.0 -87.0 -15.0 7.59
5 18.0 42.0 51.0 9.99 513
6 -63.0 -12.0 -9.0 9.20 540
6a -63.0 -18.0 -15.0 9.05
7 -48.0 -69.0 42.0 8.93 486
7a -54.0 -66.0 36.0 8.71
8 -42.0 -72.0 33.0 8.72 729
9 -12.0 39.0 54.0 8.52 432
9a -15.0 30.0 51.0 7.87
10 -24.0 30.0 48.0 8.51 648
10a -18.0 30.0 42.0 8.39
11 -36.0 -54.0 -24.0 8.04 756
11a -45.0 -54.0 -21.0 7.61
12 -51.0 -60.0 24.0 7.50 837

Built using Nilearn. Source code on GitHub. File bugs & feature requests here.

BIDS features

Adapted from First level analysis of a complete BIDS dataset from openneuro

FLM Bids Features Stat maps

FLM Bids Features Stat maps

First Level Model

Model details:

drift_model cosine
drift_order 1
high_pass (Hz) 0.01
hrf_model glover
noise_model ar1
scaling_axis 0
signal_scaling 0
slice_time_ref 0.0
smoothing_fwhm 5.0
standardize False
subject_label 10159
t_r (s) 2
target_affine None
target_shape None

Design Matrix:

Plot of Design Matrix used in Run 1.

Contrasts

Plot of the contrast: StopSuccess - Go.

Mask