Examples of GLM reports#

First level report#

ADHD#

Adapted from Default Mode Network extraction of ADHD dataset

ADHD DMN Report

ADHD DMN Report

First Level Model

Model details:

drift_model cosine
drift_order 1
high_pass (Hz) 0.01
hrf_model glover
noise_model ar1
scaling_axis 0
signal_scaling 0
slice_time_ref 0.0
smoothing_fwhm None
standardize False
subject_label None
t_r (s) 2.0
target_affine None
target_shape None

Design Matrix:

Plot of Design Matrix used in Run 1.

Contrasts

Plot of the contrast: seed_based_glm.

Mask

Model did not supply a mask image.

Stat Maps with Cluster Tables

seed_based_glm

Stat map plot for the contrast: seed_based_glm
Contrast Plot Plot of the contrast: seed_based_glm.

Cluster Table
Height control bonferroni
α 9.00E-4
Threshold (computed) 5.669
Cluster size threshold (voxels) 15
Minimum distance (mm) 8.0

Cluster ID X Y Z Peak Stat Cluster Size (mm3)
1 3.0 -54.0 18.0 13.01 12393
1a 0.0 -57.0 30.0 12.68
1b 0.0 -48.0 30.0 11.96
1c -3.0 -51.0 18.0 11.91
2 0.0 51.0 -6.0 11.08 5562
2a 3.0 69.0 3.0 10.62
2b 0.0 57.0 3.0 10.31
2c 0.0 63.0 15.0 10.12
3 57.0 -66.0 27.0 10.91 1188
3a 48.0 -57.0 30.0 8.99
3b 51.0 -69.0 27.0 8.51
4 6.0 -84.0 -18.0 10.71 756
4a -3.0 -87.0 -15.0 7.59
5 18.0 42.0 51.0 9.99 513
6 -63.0 -12.0 -9.0 9.20 540
6a -63.0 -18.0 -15.0 9.05
7 -48.0 -69.0 42.0 8.93 486
7a -54.0 -66.0 36.0 8.71
8 -42.0 -72.0 33.0 8.72 729
9 -12.0 39.0 54.0 8.52 432
9a -15.0 30.0 51.0 7.87
10 -24.0 30.0 48.0 8.51 648
10a -18.0 30.0 42.0 8.39
11 -36.0 -54.0 -24.0 8.04 756
11a -45.0 -54.0 -21.0 7.61
12 -51.0 -60.0 24.0 7.50 837

Built using Nilearn. Source code on GitHub. File bugs & feature requests here.

BIDS features#

Adapted from First level analysis of a complete BIDS dataset from openneuro

FLM Bids Features Stat maps

FLM Bids Features Stat maps

First Level Model

Model details:

drift_model cosine
drift_order 1
high_pass (Hz) 0.01
hrf_model glover
noise_model ar1
scaling_axis 0
signal_scaling 0
slice_time_ref 0.0
smoothing_fwhm 5.0
standardize False
subject_label 10159
t_r (s) 2
target_affine None
target_shape None

Design Matrix:

Plot of Design Matrix used in Run 1.

Contrasts

Plot of the contrast: StopSuccess - Go.

Mask

Model did not supply a mask image.

Stat Maps with Cluster Tables

StopSuccess - Go

Stat map plot for the contrast: StopSuccess - Go
Contrast Plot Plot of the contrast: StopSuccess - Go.

Cluster Table
Height control fpr
α 0.001
Threshold (computed) 3.291
Cluster size threshold (voxels) 3
Minimum distance (mm) 8.0

Cluster ID X Y Z Peak Stat Cluster Size (mm3)
1 -66.0 -45.0 22.0 5.31 4176
1a -66.0 -33.0 18.0 4.67
1b -48.0 -36.0 14.0 4.53
1c -60.0 -30.0 10.0 4.11
2 -42.0 15.0 26.0 4.92 2196
2a -51.0 9.0 34.0 4.72
2b -42.0 9.0 30.0 4.68
2c -57.0 12.0 38.0 4.59
3 -45.0 -12.0 26.0 4.84 144
4 57.0 -27.0 2.0 4.69 324
4a 66.0 -27.0 2.0 3.66
5 54.0 9.0 14.0 4.65 144
6 -66.0 -30.0 6.0 4.51 144
7 -6.0 -15.0 34.0 4.47 108
8 42.0 9.0 34.0 4.46 324
9 36.0 15.0 10.0 4.32 216
10 -60.0 -27.0 -2.0 4.32 108
11 6.0 18.0 34.0 4.26 1116
12 -57.0 -48.0 10.0 4.25 828
13 6.0 6.0 54.0 4.21 180
14 -45.0 21.0 2.0 4.19 216
14a -54.0 21.0 6.0 3.39
15 45.0 -21.0 42.0 4.16 288
16 63.0 -9.0 2.0 4.16 180
17 63.0 -24.0 30.0 4.08 288
18 -3.0 15.0 46.0 4.08 432
18a 3.0 9.0 50.0 3.80
19 -12.0 6.0 6.0 4.06 540
19a -9.0 -3.0 10.0 3.73
19b -9.0 6.0 14.0 3.71
20 -30.0 24.0 2.0 4.05 216
21 6.0 -3.0 74.0 4.05 108
22 -27.0 45.0 18.0 4.04 216
23 54.0 -39.0 34.0 4.02 108
24 -15.0 -66.0 38.0 3.99 252
25 -18.0 -63.0 6.0 3.99 144
26 3.0 -24.0 30.0 3.95 288
27 12.0 -72.0 22.0 3.94 216
28 36.0 -48.0 -26.0 3.93 108
29 33.0 42.0 34.0 3.91 504
29a 30.0 45.0 26.0 3.88
30 9.0 6.0 6.0 3.88 108
31 -12.0 -24.0 10.0 3.82 144
32 0.0 0.0 38.0 3.82 108
33 51.0 -30.0 14.0 3.78 252
34 -54.0 -57.0 -2.0 3.77 108
35 -9.0 15.0 34.0 3.67 144
36 51.0 -24.0 10.0 3.65 108
37 15.0 -30.0 2.0 3.39 144

Built using Nilearn. Source code on GitHub. File bugs & feature requests here.

FIAC#

Adapted from Simple example of two-runs fMRI model fitting

Report: First Level Model for DSp_minus_SSp, DSp_minus_SSp_for_DSt, DStDSp_minus_SStSSp, DSt_minus_SSt, DSt_minus_SSt_for_DSp, Deactivation, Effects_of_interest, SStSSp_minus_DStDSp

Statistical Report for DSp_minus_SSp, DSp_minus_SSp_for_DSt, DStDSp_minus_SStSSp, DSt_minus_SSt, DSt_minus_SSt_for_DSp, Deactivation, Effects_of_interest, SStSSp_minus_DStDSp

First Level Model

Model details:

drift_model cosine
drift_order 1
high_pass (Hz) 0.01
hrf_model glover
noise_model ar1
scaling_axis 0
signal_scaling 0
slice_time_ref 0.0
smoothing_fwhm None
standardize False
subject_label None
t_r (s) None
target_affine None
target_shape None

Design Matrix:

Plot of Design Matrix used in Run 1. Plot of Design Matrix used in Run 2.

Contrasts

Plot of the contrast: SStSSp_minus_DStDSp. Plot of the contrast: DStDSp_minus_SStSSp. Plot of the contrast: DSt_minus_SSt. Plot of the contrast: DSp_minus_SSp. Plot of the contrast: DSt_minus_SSt_for_DSp. Plot of the contrast: DSp_minus_SSp_for_DSt. Plot of the contrast: Deactivation. Plot of the contrast: Effects_of_interest.

Mask

Model did not supply a mask image.

Stat Maps with Cluster Tables

SStSSp_minus_DStDSp

Stat map plot for the contrast: SStSSp_minus_DStDSp
Contrast Plot Plot of the contrast: SStSSp_minus_DStDSp.

Cluster Table
Height control fdr
α 0.001
Threshold (computed) inf
Cluster size threshold (voxels) 0
Minimum distance (mm) 8.0

Cluster ID X Y Z Peak Stat Cluster Size (mm3)

DStDSp_minus_SStSSp

Stat map plot for the contrast: DStDSp_minus_SStSSp
Contrast Plot Plot of the contrast: DStDSp_minus_SStSSp.

Cluster Table
Height control fdr
α 0.001
Threshold (computed) inf
Cluster size threshold (voxels) 0
Minimum distance (mm) 8.0

Cluster ID X Y Z Peak Stat Cluster Size (mm3)

DSt_minus_SSt

Stat map plot for the contrast: DSt_minus_SSt
Contrast Plot Plot of the contrast: DSt_minus_SSt.

Cluster Table
Height control fdr
α 0.001
Threshold (computed) 5.612
Cluster size threshold (voxels) 0
Minimum distance (mm) 8.0

Cluster ID X Y Z Peak Stat Cluster Size (mm3)

DSp_minus_SSp

Stat map plot for the contrast: DSp_minus_SSp
Contrast Plot Plot of the contrast: DSp_minus_SSp.

Cluster Table
Height control fdr
α 0.001
Threshold (computed) inf
Cluster size threshold (voxels) 0
Minimum distance (mm) 8.0

Cluster ID X Y Z Peak Stat Cluster Size (mm3)

DSt_minus_SSt_for_DSp

Stat map plot for the contrast: DSt_minus_SSt_for_DSp
Contrast Plot Plot of the contrast: DSt_minus_SSt_for_DSp.

Cluster Table
Height control fdr
α 0.001
Threshold (computed) inf
Cluster size threshold (voxels) 0
Minimum distance (mm) 8.0

Cluster ID X Y Z Peak Stat Cluster Size (mm3)

DSp_minus_SSp_for_DSt

Stat map plot for the contrast: DSp_minus_SSp_for_DSt
Contrast Plot Plot of the contrast: DSp_minus_SSp_for_DSt.

Cluster Table
Height control fdr
α 0.001
Threshold (computed) inf
Cluster size threshold (voxels) 0
Minimum distance (mm) 8.0

Cluster ID X Y Z Peak Stat Cluster Size (mm3)

Deactivation

Stat map plot for the contrast: Deactivation
Contrast Plot Plot of the contrast: Deactivation.

Cluster Table
Height control fdr
α 0.001
Threshold (computed) 4.9
Cluster size threshold (voxels) 0
Minimum distance (mm) 8.0

Cluster ID X Y Z Peak Stat Cluster Size (mm3)
1 -39.0 -114.0 60.0 6.01 36
2 -51.0 -57.0 56.0 5.39 36
3 -51.0 -96.0 64.0 5.38 36
4 -42.0 -93.0 64.0 5.36 72
5 -126.0 -108.0 60.0 5.35 36
6 -45.0 -93.0 52.0 5.23 36
7 -135.0 -111.0 60.0 5.21 36
8 -45.0 -60.0 60.0 5.21 36
9 -57.0 -57.0 60.0 5.00 36

Effects_of_interest

Stat map plot for the contrast: Effects_of_interest
Contrast Plot Plot of the contrast: Effects_of_interest.

Cluster Table
Height control fdr
α 0.001
Threshold (computed) 4.164
Cluster size threshold (voxels) 0
Minimum distance (mm) 8.0

Cluster ID X Y Z Peak Stat Cluster Size (mm3)
1 -33.0 -111.0 56.0 16.62 6408
1a -45.0 -99.0 64.0 13.71
1b -42.0 -111.0 56.0 13.50
1c -33.0 -96.0 56.0 12.10
2 -45.0 -75.0 56.0 13.99 1188
2a -42.0 -66.0 52.0 10.15
2b -51.0 -84.0 56.0 9.47
3 -138.0 -111.0 56.0 13.17 5220
3a -126.0 -117.0 56.0 11.96
3b -141.0 -105.0 48.0 11.50
3c -135.0 -96.0 48.0 11.43
4 -57.0 -90.0 48.0 9.65 540
4a -57.0 -78.0 40.0 9.43
5 -60.0 -72.0 36.0 8.94 72
6 -48.0 -57.0 56.0 8.58 1224
6a -45.0 -60.0 68.0 6.97
6b -57.0 -57.0 60.0 5.11
7 -123.0 -84.0 32.0 8.47 36
8 -126.0 -150.0 56.0 8.13 324
9 -141.0 -126.0 36.0 8.04 108
10 -135.0 -126.0 76.0 7.95 468
11 -135.0 -84.0 44.0 7.85 180
12 -87.0 -111.0 88.0 7.73 360
13 -99.0 -141.0 20.0 7.63 36
14 -96.0 -138.0 104.0 7.43 108
15 -144.0 -108.0 64.0 7.05 36
16 -60.0 -30.0 48.0 6.70 144
17 -90.0 -150.0 92.0 6.68 936
18 -114.0 -135.0 20.0 6.64 36
19 -90.0 -129.0 100.0 6.63 360
20 -117.0 -111.0 56.0 6.57 72
21 -90.0 -114.0 112.0 6.49 36
22 -126.0 -150.0 80.0 6.45 288
23 -138.0 -117.0 40.0 6.43 108
24 -120.0 -48.0 68.0 6.43 72
25 -117.0 -114.0 60.0 6.34 144
26 -117.0 -69.0 80.0 6.34 36
27 -57.0 -75.0 88.0 6.33 72
28 -138.0 -87.0 48.0 6.31 36
29 -84.0 -135.0 100.0 6.29 540
30 -57.0 -78.0 16.0 6.29 72
31 -54.0 -72.0 16.0 6.28 144
32 -93.0 -135.0 108.0 6.26 72
33 -93.0 -147.0 4.0 6.23 108
34 -108.0 -141.0 0.0 6.19 252
35 -51.0 -63.0 76.0 6.19 288
35a -60.0 -63.0 72.0 4.47
36 -99.0 -141.0 60.0 6.17 36
37 -81.0 -132.0 60.0 6.17 468
37a -84.0 -126.0 52.0 6.11
37b -84.0 -123.0 60.0 4.66
38 -45.0 -108.0 36.0 6.14 36
39 -60.0 -36.0 52.0 6.12 72
40 -69.0 -108.0 112.0 6.09 72
41 -126.0 -150.0 48.0 6.08 36
42 -129.0 -60.0 48.0 6.07 108
43 -117.0 -90.0 104.0 6.05 72
44 -93.0 -150.0 80.0 6.05 72
45 -126.0 -45.0 72.0 6.04 108
46 -141.0 -102.0 40.0 6.01 72
47 -51.0 -63.0 44.0 6.01 72
48 -93.0 -69.0 80.0 6.00 72
49 -48.0 -60.0 44.0 5.96 36
50 -144.0 -99.0 44.0 5.94 72
51 -126.0 -54.0 80.0 5.94 72
52 -66.0 -24.0 52.0 5.92 72
53 -48.0 -78.0 92.0 5.92 72
54 -141.0 -99.0 56.0 5.91 36
55 -60.0 -99.0 64.0 5.86 72
56 -120.0 -132.0 24.0 5.86 36
57 -120.0 -36.0 56.0 5.86 36
58 -60.0 -51.0 56.0 5.82 36
59 -75.0 -57.0 76.0 5.78 144
60 -72.0 -147.0 8.0 5.77 36
61 -123.0 -90.0 36.0 5.76 36
62 -78.0 -144.0 96.0 5.74 288
63 -138.0 -78.0 64.0 5.74 72
64 -132.0 -69.0 88.0 5.73 36
65 -114.0 -144.0 8.0 5.71 180
66 -102.0 -144.0 80.0 5.70 36
67 -42.0 -120.0 24.0 5.68 36
68 -141.0 -78.0 56.0 5.68 36
69 -96.0 -60.0 72.0 5.67 468
70 -48.0 -114.0 64.0 5.67 72
71 -96.0 -45.0 60.0 5.64 72
72 -126.0 -72.0 88.0 5.61 72
73 -102.0 -75.0 104.0 5.61 108
74 -120.0 -66.0 96.0 5.61 36
75 -48.0 -108.0 32.0 5.60 108
76 -102.0 -33.0 56.0 5.59 108
77 -87.0 -42.0 88.0 5.57 72
78 -96.0 -42.0 92.0 5.55 36
79 -99.0 -75.0 108.0 5.53 36
80 -108.0 -30.0 80.0 5.52 36
81 -78.0 -51.0 76.0 5.50 36
82 -135.0 -105.0 88.0 5.49 72
83 -93.0 -87.0 84.0 5.48 36
84 -111.0 -120.0 32.0 5.48 180
85 -123.0 -153.0 68.0 5.47 36
86 -123.0 -84.0 100.0 5.47 108
87 -120.0 -24.0 60.0 5.47 72
88 -78.0 -117.0 84.0 5.47 144
89 -72.0 -156.0 20.0 5.46 36
90 -99.0 -108.0 80.0 5.40 36
91 -87.0 -138.0 64.0 5.39 36
92 -135.0 -60.0 72.0 5.36 36
93 -69.0 -84.0 24.0 5.36 72
94 -114.0 -48.0 88.0 5.33 36
95 -90.0 -126.0 84.0 5.32 108
96 -63.0 -147.0 12.0 5.28 36
97 -51.0 -114.0 28.0 5.26 144
98 -105.0 -147.0 92.0 5.25 108
99 -51.0 -78.0 88.0 5.22 72
100 -54.0 -69.0 48.0 5.21 36
101 -54.0 -120.0 24.0 5.21 36
102 -120.0 -60.0 56.0 5.19 72
103 -93.0 -150.0 24.0 5.16 36
104 -90.0 -117.0 92.0 5.16 72
105 -90.0 -123.0 112.0 5.16 36
106 -138.0 -81.0 60.0 5.15 36
107 -81.0 -30.0 72.0 5.14 72
108 -102.0 -36.0 84.0 5.14 72
109 -60.0 -90.0 56.0 5.14 36
110 -90.0 -132.0 64.0 5.13 108
111 -111.0 -123.0 108.0 5.12 36
112 -123.0 -102.0 64.0 5.11 36
113 -120.0 -36.0 72.0 5.09 36
114 -105.0 -141.0 24.0 5.06 108
115 -132.0 -141.0 32.0 5.05 36
116 -87.0 -18.0 60.0 5.03 36
117 -132.0 -102.0 96.0 5.03 36
118 -90.0 -96.0 112.0 5.03 36
119 -93.0 -42.0 56.0 5.02 36
120 -99.0 -33.0 84.0 5.01 36
121 -96.0 -147.0 16.0 5.01 36
122 -114.0 -150.0 88.0 5.00 72
123 -75.0 -108.0 112.0 4.98 108
124 -51.0 -75.0 44.0 4.98 72
125 -126.0 -138.0 92.0 4.97 72
126 -45.0 -81.0 64.0 4.97 36
127 -135.0 -54.0 36.0 4.94 36
128 -93.0 -78.0 84.0 4.94 108
129 -81.0 -84.0 24.0 4.94 36
130 -117.0 -114.0 104.0 4.92 72
131 -57.0 -75.0 96.0 4.92 36
132 -123.0 -87.0 40.0 4.91 36
133 -78.0 -48.0 80.0 4.91 72
134 -45.0 -117.0 24.0 4.90 36
135 -54.0 -93.0 56.0 4.89 72
136 -48.0 -135.0 12.0 4.88 36
137 -60.0 -57.0 52.0 4.87 36
138 -51.0 -42.0 64.0 4.86 36
139 -48.0 -102.0 96.0 4.85 36
140 -51.0 -138.0 80.0 4.85 72
141 -129.0 -63.0 84.0 4.84 36
142 -51.0 -141.0 88.0 4.84 36
143 -99.0 -51.0 96.0 4.83 36
144 -102.0 -144.0 12.0 4.82 108
145 -90.0 -141.0 96.0 4.82 36
146 -138.0 -132.0 88.0 4.81 36
147 -90.0 -69.0 96.0 4.80 72
148 -135.0 -126.0 64.0 4.80 36
149 -87.0 -33.0 52.0 4.79 36
150 -51.0 -66.0 36.0 4.78 72
151 -51.0 -78.0 16.0 4.77 36
152 -93.0 -72.0 96.0 4.75 36
153 -96.0 -72.0 84.0 4.75 72
154 -129.0 -57.0 64.0 4.74 36
155 -72.0 -132.0 64.0 4.71 36
156 -63.0 -78.0 40.0 4.71 36
157 -60.0 -90.0 64.0 4.71 36
158 -63.0 -57.0 48.0 4.69 36
159 -60.0 -75.0 40.0 4.68 36
160 -105.0 -93.0 112.0 4.68 36
161 -114.0 -123.0 104.0 4.67 36
162 -87.0 -42.0 64.0 4.67 36
163 -51.0 -75.0 52.0 4.65 36
164 -93.0 -60.0 100.0 4.60 36
165 -75.0 -39.0 80.0 4.60 36
166 -63.0 -54.0 92.0 4.60 36
167 -84.0 -126.0 64.0 4.59 36
168 -48.0 -99.0 80.0 4.59 36
169 -90.0 -141.0 104.0 4.58 36
170 -72.0 -33.0 48.0 4.58 36
171 -99.0 -45.0 92.0 4.57 36
172 -114.0 -147.0 92.0 4.57 36
173 -102.0 -120.0 28.0 4.56 36
174 -138.0 -135.0 48.0 4.55 72
175 -114.0 -111.0 108.0 4.55 72
176 -129.0 -105.0 88.0 4.55 36
177 -60.0 -72.0 96.0 4.54 36
178 -93.0 -150.0 72.0 4.54 36
179 -57.0 -33.0 48.0 4.54 36
180 -81.0 -120.0 52.0 4.53 36
181 -96.0 -138.0 96.0 4.53 36
182 -84.0 -147.0 100.0 4.52 36
183 -117.0 -147.0 88.0 4.52 36
184 -123.0 -144.0 72.0 4.52 36
185 -48.0 -78.0 24.0 4.50 36
186 -111.0 -93.0 108.0 4.49 36
187 -51.0 -135.0 16.0 4.49 36
188 -135.0 -48.0 44.0 4.49 36
189 -126.0 -63.0 52.0 4.48 36
190 -54.0 -63.0 48.0 4.46 36
191 -87.0 -36.0 48.0 4.45 36
192 -111.0 -108.0 112.0 4.45 36
193 -63.0 -114.0 28.0 4.44 36
194 -84.0 -153.0 80.0 4.44 36
195 -33.0 -108.0 72.0 4.43 72
196 -93.0 -108.0 72.0 4.43 36
197 -141.0 -90.0 56.0 4.42 36
198 -84.0 -150.0 16.0 4.41 36
199 -75.0 -147.0 4.0 4.40 36
200 -48.0 -57.0 76.0 4.40 36
201 -132.0 -129.0 92.0 4.39 36
202 -78.0 -60.0 80.0 4.38 36
203 -72.0 -78.0 96.0 4.38 36
204 -54.0 -39.0 48.0 4.37 36
205 -96.0 -144.0 12.0 4.37 72
206 -123.0 -33.0 56.0 4.37 72
207 -69.0 -132.0 68.0 4.36 36
208 -111.0 -114.0 112.0 4.35 36
209 -81.0 -126.0 104.0 4.35 36
210 -117.0 -54.0 72.0 4.35 36
211 -75.0 -150.0 20.0 4.35 36
212 -72.0 -141.0 96.0 4.33 36
213 -96.0 -63.0 80.0 4.33 36
214 -60.0 -87.0 100.0 4.32 36
215 -90.0 -147.0 56.0 4.32 36
216 -60.0 -78.0 100.0 4.32 36
217 -63.0 -72.0 40.0 4.32 36
218 -81.0 -144.0 100.0 4.31 36
219 -126.0 -69.0 92.0 4.30 36
220 -141.0 -120.0 68.0 4.30 36
221 -117.0 -30.0 68.0 4.29 36
222 -120.0 -147.0 72.0 4.28 36
223 -48.0 -120.0 24.0 4.28 36
224 -78.0 -111.0 80.0 4.27 36
225 -135.0 -132.0 40.0 4.27 36
226 -90.0 -123.0 68.0 4.26 36
227 -102.0 -78.0 108.0 4.26 36
228 -45.0 -66.0 64.0 4.25 36
229 -135.0 -129.0 36.0 4.24 36
230 -66.0 -105.0 24.0 4.23 36
231 -129.0 -48.0 72.0 4.23 36
232 -126.0 -48.0 76.0 4.22 36
233 -99.0 -147.0 12.0 4.22 36
234 -60.0 -60.0 60.0 4.22 36
235 -99.0 -144.0 76.0 4.22 36
236 -126.0 -81.0 96.0 4.21 36
237 -138.0 -129.0 84.0 4.21 36
238 -39.0 -75.0 72.0 4.21 36
239 -102.0 -111.0 80.0 4.20 36
240 -72.0 -78.0 104.0 4.20 36
241 -99.0 -48.0 60.0 4.19 36
242 -135.0 -78.0 44.0 4.19 36
243 -129.0 -81.0 48.0 4.18 36
244 -102.0 -135.0 28.0 4.18 36
245 -123.0 -108.0 84.0 4.18 36
246 -114.0 -150.0 28.0 4.18 36
247 -57.0 -132.0 68.0 4.17 36
248 -66.0 -126.0 108.0 4.16 36

Built using Nilearn. Source code on GitHub. File bugs & feature requests here.

Second level report#

Adapted from Voxel-Based Morphometry on OASIS dataset

Report: Second Level Model for age, sex

Statistical Report for age, sex

Second Level Model

Model details:

smoothing_fwhm 2.0
target_affine NaN
target_shape NaN

Design Matrix:

Plot of Design Matrix used in Run 1.

Contrasts

Plot of the contrast: age. Plot of the contrast: sex.

Mask

Model did not supply a mask image.

Stat Maps with Cluster Tables

age

Stat map plot for the contrast: age
Contrast Plot Plot of the contrast: age.

Cluster Table
Height control None
Threshold Z 3.09
Cluster size threshold (voxels) 0
Minimum distance (mm) 8.0

Cluster ID X Y Z Peak Stat Cluster Size (mm3)
1 -10.0 -66.0 -4.0 4.53 8
2 -2.0 -2.0 -8.0 4.46 8
3 -14.0 -54.0 48.0 4.25 8
4 -20.0 -6.0 -34.0 4.25 8
5 6.0 48.0 34.0 4.14 8
6 50.0 16.0 -4.0 4.09 8
7 -8.0 -18.0 -2.0 3.89 8
8 18.0 26.0 -20.0 3.88 8
9 -2.0 26.0 32.0 3.87 8
10 -44.0 28.0 0.0 3.86 8
11 60.0 -4.0 -8.0 3.79 8
12 0.0 32.0 -2.0 3.78 8
13 32.0 46.0 -18.0 3.78 8
14 -42.0 -64.0 -8.0 3.76 8
15 -26.0 -34.0 14.0 3.75 8
16 -6.0 40.0 -8.0 3.71 8
17 -8.0 -58.0 22.0 3.69 8
18 -42.0 12.0 26.0 3.69 8
19 26.0 -32.0 -10.0 3.68 8
20 46.0 -26.0 -8.0 3.68 8
21 -30.0 18.0 -42.0 3.67 8
22 20.0 66.0 4.0 3.66 8
23 -48.0 8.0 40.0 3.65 8
24 -44.0 16.0 40.0 3.65 8
25 -62.0 -8.0 28.0 3.65 8
26 -60.0 -56.0 20.0 3.64 8
27 -16.0 -48.0 70.0 3.62 8
28 -16.0 70.0 12.0 3.62 8
29 38.0 -74.0 -44.0 3.62 8
30 -2.0 24.0 -12.0 3.60 8
31 -4.0 -6.0 24.0 3.60 8
32 -8.0 52.0 34.0 3.58 8
33 64.0 -50.0 32.0 3.57 8
34 -2.0 10.0 28.0 3.57 8
35 64.0 -26.0 24.0 3.57 8
36 -4.0 -28.0 -2.0 3.57 8
37 56.0 -8.0 40.0 3.56 8
38 16.0 0.0 16.0 3.56 8
39 0.0 -16.0 -36.0 3.55 8
40 -36.0 34.0 50.0 3.55 8
41 6.0 -58.0 0.0 3.54 8
42 22.0 34.0 -24.0 3.54 8
43 -16.0 32.0 -24.0 3.54 8
44 54.0 -44.0 52.0 3.53 8
45 12.0 -8.0 14.0 3.53 8
46 -58.0 -14.0 46.0 3.52 8
47 -10.0 6.0 12.0 3.51 16
48 46.0 -48.0 -20.0 3.50 8
49 -20.0 38.0 -16.0 3.49 8
50 12.0 14.0 2.0 3.48 8
51 0.0 0.0 36.0 3.48 8
52 2.0 -48.0 66.0 3.47 8
53 2.0 -40.0 60.0 3.47 8
54 26.0 64.0 16.0 3.47 8
55 -8.0 -14.0 26.0 3.46 8
56 -46.0 -66.0 -18.0 3.46 8
57 -52.0 -34.0 44.0 3.45 8
58 56.0 -14.0 -32.0 3.45 8
59 2.0 4.0 52.0 3.44 8
60 12.0 -22.0 4.0 3.44 8
61 66.0 -6.0 18.0 3.44 8
62 62.0 -10.0 8.0 3.44 8
63 4.0 22.0 22.0 3.44 8
64 64.0 2.0 -16.0 3.43 8
65 6.0 -46.0 38.0 3.42 8
66 4.0 -56.0 22.0 3.42 8
67 -10.0 -18.0 40.0 3.41 8
68 6.0 -58.0 28.0 3.41 8
69 8.0 -2.0 56.0 3.41 8
70 2.0 0.0 -2.0 3.41 8
71 56.0 -4.0 -32.0 3.41 8
72 -18.0 24.0 52.0 3.41 8
73 0.0 26.0 56.0 3.40 8
74 6.0 -76.0 -2.0 3.39 8
75 -12.0 42.0 -20.0 3.38 8
76 -4.0 -54.0 -8.0 3.38 8
77 -26.0 -30.0 60.0 3.37 8
78 32.0 -22.0 -28.0 3.37 8
79 -6.0 2.0 -16.0 3.36 8
80 -18.0 28.0 -2.0 3.36 8
81 24.0 34.0 40.0 3.36 8
82 30.0 -32.0 -14.0 3.35 8
83 2.0 32.0 -18.0 3.35 8
84 -26.0 32.0 -16.0 3.35 8
85 -18.0 -28.0 -26.0 3.34 8
86 -6.0 -10.0 12.0 3.34 8
87 10.0 -76.0 -48.0 3.34 8
88 34.0 -56.0 -50.0 3.33 8
89 2.0 -34.0 58.0 3.33 8
90 52.0 -18.0 -8.0 3.33 8
91 -2.0 46.0 38.0 3.32 8
92 -2.0 -4.0 14.0 3.32 8
93 60.0 -50.0 2.0 3.32 8
94 42.0 16.0 -46.0 3.32 8
95 30.0 -30.0 -4.0 3.31 8
96 28.0 40.0 42.0 3.31 8
97 -40.0 30.0 42.0 3.31 8
98 2.0 -32.0 -22.0 3.30 8
99 24.0 44.0 28.0 3.30 8
100 -4.0 -30.0 -8.0 3.30 8
101 -20.0 58.0 18.0 3.30 8
102 6.0 -92.0 32.0 3.29 8
103 -28.0 -38.0 16.0 3.29 8
104 12.0 48.0 10.0 3.29 8
105 -6.0 38.0 4.0 3.29 8
106 4.0 -20.0 22.0 3.29 8
107 -6.0 -80.0 36.0 3.28 8
108 -12.0 -44.0 68.0 3.28 8
109 62.0 6.0 -22.0 3.28 8
110 64.0 2.0 26.0 3.28 8
111 8.0 54.0 -22.0 3.27 8
112 -34.0 12.0 -46.0 3.27 8
113 -4.0 -12.0 26.0 3.27 8
114 28.0 -38.0 -26.0 3.27 8
115 -2.0 -18.0 54.0 3.27 8
116 10.0 -16.0 16.0 3.27 8
117 -64.0 -20.0 20.0 3.27 8
118 2.0 34.0 20.0 3.26 8
119 -2.0 20.0 26.0 3.26 8
120 -10.0 -86.0 28.0 3.25 8
121 20.0 -24.0 -4.0 3.25 8
122 0.0 42.0 12.0 3.25 8
123 42.0 -10.0 20.0 3.24 8
124 24.0 0.0 56.0 3.24 8
125 18.0 -26.0 12.0 3.23 8
126 8.0 12.0 62.0 3.23 8
127 4.0 -16.0 -18.0 3.22 8
128 -16.0 10.0 10.0 3.22 8
129 -24.0 -42.0 70.0 3.22 8
130 52.0 -36.0 -4.0 3.21 8
131 -18.0 66.0 8.0 3.21 8
132 22.0 -38.0 -2.0 3.21 8
133 12.0 70.0 6.0 3.21 8
134 24.0 4.0 66.0 3.21 8
135 -66.0 -20.0 32.0 3.20 8
136 44.0 -2.0 56.0 3.20 8
137 -58.0 4.0 -18.0 3.20 8
138 -4.0 -48.0 -8.0 3.20 8
139 54.0 -18.0 28.0 3.20 8
140 -10.0 4.0 66.0 3.19 8
141 8.0 14.0 -12.0 3.19 8
142 6.0 -58.0 -16.0 3.19 8
143 10.0 10.0 12.0 3.19 8
144 -50.0 -8.0 -12.0 3.19 8
145 54.0 -16.0 34.0 3.19 8
146 -40.0 -66.0 50.0 3.19 8
147 -2.0 -46.0 66.0 3.18 8
148 -42.0 16.0 -12.0 3.18 8
149 -14.0 -38.0 14.0 3.18 8
150 66.0 -10.0 18.0 3.18 8
151 -24.0 -44.0 -2.0 3.18 8
152 42.0 24.0 -6.0 3.18 8
153 -60.0 -14.0 36.0 3.18 8
154 56.0 -4.0 -8.0 3.18 8
155 -20.0 -26.0 14.0 3.17 8
156 30.0 -40.0 8.0 3.17 8
157 6.0 8.0 30.0 3.17 8
158 4.0 -40.0 78.0 3.17 8
159 16.0 34.0 56.0 3.17 8
160 68.0 -4.0 14.0 3.17 8
161 24.0 -74.0 44.0 3.17 8
162 32.0 -38.0 -28.0 3.17 8
163 -36.0 -62.0 38.0 3.16 8
164 34.0 34.0 46.0 3.16 8
165 -16.0 -40.0 8.0 3.16 8
166 10.0 -86.0 34.0 3.16 8
167 10.0 -32.0 18.0 3.15 8
168 -6.0 -46.0 28.0 3.15 8
169 -42.0 -30.0 46.0 3.15 8
170 -36.0 6.0 44.0 3.15 8
171 58.0 -52.0 4.0 3.15 8
172 10.0 0.0 14.0 3.15 8
173 -38.0 -14.0 -42.0 3.15 8
174 2.0 -54.0 32.0 3.15 8
175 16.0 58.0 32.0 3.15 8
176 -8.0 -10.0 26.0 3.14 8
177 56.0 -18.0 34.0 3.14 8
178 40.0 22.0 -6.0 3.14 8
179 40.0 -28.0 40.0 3.14 8
180 54.0 -14.0 -14.0 3.14 8
181 44.0 14.0 44.0 3.14 8
182 -28.0 -76.0 -58.0 3.13 8
183 14.0 -28.0 14.0 3.13 8
184 36.0 24.0 4.0 3.13 8
185 -2.0 12.0 30.0 3.13 8
186 48.0 -42.0 24.0 3.13 8
187 -46.0 -24.0 10.0 3.13 8
188 -42.0 4.0 -6.0 3.13 8
189 -32.0 -34.0 46.0 3.13 8
190 -14.0 -10.0 10.0 3.13 8
191 -26.0 -10.0 -46.0 3.12 8
192 -42.0 10.0 -8.0 3.12 8
193 44.0 -40.0 50.0 3.11 8
194 -60.0 -40.0 -26.0 3.11 8
195 2.0 10.0 56.0 3.11 8
196 32.0 34.0 -14.0 3.11 8
197 -42.0 -66.0 54.0 3.11 8
198 -22.0 -46.0 70.0 3.11 8
199 -28.0 -34.0 -10.0 3.10 8
200 6.0 26.0 54.0 3.10 8
201 14.0 -48.0 -6.0 3.10 8
202 -28.0 30.0 -22.0 3.10 8
203 2.0 -34.0 2.0 3.10 8
204 -10.0 -54.0 68.0 3.10 8
205 -58.0 -2.0 8.0 3.10 8
206 16.0 -6.0 -34.0 3.10 8
207 14.0 -28.0 -22.0 3.09 8
208 10.0 34.0 42.0 3.09 8
209 34.0 -94.0 6.0 3.09 8
210 18.0 -6.0 22.0 3.09 8
211 14.0 -76.0 -36.0 3.09 8

sex

Stat map plot for the contrast: sex
Contrast Plot Plot of the contrast: sex.

Cluster Table
Height control None
Threshold Z 3.09
Cluster size threshold (voxels) 0
Minimum distance (mm) 8.0

Cluster ID X Y Z Peak Stat Cluster Size (mm3)
1 -34.0 -10.0 -18.0 4.73 8
2 -4.0 -22.0 18.0 4.62 8
3 52.0 32.0 0.0 4.27 8
4 -40.0 -76.0 -24.0 4.20 8
5 38.0 -74.0 -44.0 4.14 16
6 24.0 -74.0 -48.0 4.10 8
7 2.0 -44.0 -56.0 3.98 8
8 -24.0 -90.0 8.0 3.89 8
9 -30.0 -72.0 -24.0 3.87 8
10 -24.0 -78.0 -38.0 3.86 8
11 -4.0 46.0 -26.0 3.80 8
12 -12.0 8.0 20.0 3.78 8
13 32.0 6.0 32.0 3.75 8
14 -20.0 -78.0 -44.0 3.73 8
15 -58.0 -8.0 48.0 3.72 8
16 10.0 -34.0 -28.0 3.72 8
17 44.0 -66.0 -40.0 3.72 8
18 -36.0 -76.0 -28.0 3.71 8
19 -2.0 -44.0 -54.0 3.68 8
20 8.0 -82.0 -36.0 3.67 8
21 -12.0 -34.0 -28.0 3.67 8
22 -14.0 -74.0 -46.0 3.66 8
23 64.0 -32.0 -24.0 3.66 8
24 20.0 -70.0 -52.0 3.65 8
25 -38.0 2.0 30.0 3.65 8
26 -16.0 -74.0 -48.0 3.64 8
27 -40.0 32.0 -8.0 3.62 8
28 -2.0 -32.0 -20.0 3.62 8
29 2.0 52.0 18.0 3.60 8
30 -46.0 -64.0 -34.0 3.59 8
31 -24.0 -72.0 -36.0 3.59 16
32 -18.0 -80.0 -42.0 3.59 8
33 -16.0 -28.0 36.0 3.59 8
34 -24.0 -94.0 10.0 3.59 8
35 16.0 64.0 -14.0 3.59 8
36 24.0 -68.0 -40.0 3.58 16
37 -58.0 -2.0 48.0 3.58 8
38 10.0 -76.0 -48.0 3.58 8
39 -6.0 -52.0 -56.0 3.57 8
40 40.0 -70.0 -32.0 3.56 8
41 30.0 -80.0 -36.0 3.56 8
42 40.0 -66.0 -38.0 3.53 8
43 -36.0 -8.0 -26.0 3.51 8
44 -48.0 -52.0 56.0 3.50 8
45 -34.0 -38.0 -14.0 3.50 8
46 0.0 -2.0 18.0 3.50 8
47 42.0 -60.0 -42.0 3.50 8
48 34.0 -62.0 -40.0 3.48 8
49 -6.0 -18.0 62.0 3.48 8
50 22.0 -64.0 -28.0 3.48 8
51 -4.0 -8.0 20.0 3.47 8
52 -16.0 -74.0 -42.0 3.46 8
53 -8.0 0.0 40.0 3.46 8
54 -38.0 -74.0 -28.0 3.46 8
55 -40.0 34.0 28.0 3.46 8
56 28.0 -70.0 -36.0 3.45 8
57 42.0 -46.0 -22.0 3.45 8
58 -10.0 -8.0 38.0 3.44 8
59 -16.0 -74.0 -32.0 3.44 8
60 54.0 36.0 -10.0 3.43 8
61 -32.0 -66.0 -38.0 3.43 8
62 26.0 2.0 12.0 3.43 8
63 -16.0 -34.0 -46.0 3.42 8
64 -10.0 -76.0 -38.0 3.42 16
65 36.0 -54.0 40.0 3.42 8
66 38.0 -52.0 -46.0 3.42 8
67 -16.0 -78.0 44.0 3.41 8
68 -34.0 -76.0 36.0 3.41 8
69 -8.0 34.0 46.0 3.41 8
70 -10.0 20.0 8.0 3.41 8
71 -36.0 -66.0 -56.0 3.40 8
72 -26.0 -2.0 -12.0 3.40 8
73 32.0 -92.0 -8.0 3.39 8
74 -22.0 -72.0 -44.0 3.39 8
75 -58.0 0.0 38.0 3.39 8
76 34.0 -34.0 -38.0 3.37 8
77 -34.0 -54.0 -48.0 3.37 8
78 38.0 -18.0 46.0 3.36 8
79 20.0 -74.0 -44.0 3.36 8
80 34.0 -72.0 -36.0 3.36 8
81 20.0 50.0 46.0 3.36 8
82 -30.0 -58.0 -28.0 3.35 8
83 60.0 -36.0 -2.0 3.34 8
84 10.0 -70.0 -46.0 3.34 16
85 38.0 38.0 6.0 3.33 8
86 34.0 -60.0 -30.0 3.33 8
87 24.0 -52.0 10.0 3.33 8
88 18.0 -80.0 -26.0 3.32 8
89 -14.0 2.0 24.0 3.32 8
90 -40.0 -20.0 48.0 3.31 8
91 12.0 -78.0 -48.0 3.30 8
92 32.0 -78.0 -36.0 3.30 8
93 -34.0 -68.0 -28.0 3.30 8
94 30.0 -64.0 -4.0 3.29 8
95 2.0 -80.0 -10.0 3.29 16
96 42.0 -50.0 -44.0 3.29 8
97 8.0 -84.0 -12.0 3.29 8
98 16.0 -70.0 -52.0 3.27 8
99 -38.0 24.0 -24.0 3.26 8
100 -26.0 4.0 48.0 3.26 8
101 28.0 -84.0 22.0 3.26 8
102 -16.0 -82.0 -28.0 3.24 8
103 -36.0 -40.0 58.0 3.23 8
104 -44.0 -10.0 6.0 3.23 8
105 -14.0 -44.0 -46.0 3.23 8
106 14.0 -72.0 -46.0 3.23 8
107 34.0 -48.0 0.0 3.22 8
108 -14.0 42.0 20.0 3.21 8
109 48.0 -18.0 58.0 3.21 8
110 -10.0 10.0 18.0 3.20 8
111 16.0 -66.0 -46.0 3.20 8
112 -40.0 -48.0 -36.0 3.20 8
113 2.0 -82.0 -16.0 3.20 8
114 -46.0 -6.0 0.0 3.19 8
115 36.0 34.0 12.0 3.19 8
116 20.0 -86.0 -14.0 3.19 8
117 -42.0 -4.0 56.0 3.19 8
118 -10.0 -24.0 20.0 3.18 8
119 34.0 -56.0 -50.0 3.18 8
120 0.0 -24.0 46.0 3.17 8
121 -16.0 -70.0 -30.0 3.17 8
122 18.0 -66.0 -32.0 3.17 8
123 38.0 -44.0 -16.0 3.17 8
124 -32.0 -70.0 -56.0 3.17 8
125 40.0 -60.0 44.0 3.16 8
126 34.0 12.0 34.0 3.16 8
127 62.0 -38.0 4.0 3.16 8
128 36.0 -66.0 -42.0 3.15 8
129 40.0 -64.0 -44.0 3.15 8
130 -6.0 -42.0 8.0 3.15 8
131 -28.0 -8.0 -12.0 3.15 8
132 -14.0 16.0 34.0 3.15 8
133 32.0 -58.0 -44.0 3.15 8
134 -22.0 -94.0 -10.0 3.14 8
135 22.0 -80.0 -50.0 3.14 8
136 54.0 -4.0 50.0 3.14 8
137 12.0 -58.0 -34.0 3.13 8
138 40.0 -64.0 -36.0 3.13 8
139 -6.0 -14.0 22.0 3.13 8
140 -48.0 -8.0 54.0 3.13 8
141 12.0 -78.0 10.0 3.13 8
142 2.0 -44.0 -44.0 3.13 8
143 24.0 -16.0 12.0 3.12 8
144 -16.0 -70.0 -6.0 3.12 8
145 -28.0 -22.0 58.0 3.11 8
146 -34.0 -76.0 -36.0 3.11 16
147 -36.0 -60.0 -56.0 3.11 8
148 -46.0 -8.0 34.0 3.11 8
149 18.0 -50.0 -62.0 3.11 8
150 -20.0 -42.0 -10.0 3.11 8
151 -18.0 -32.0 -28.0 3.10 8
152 -52.0 -4.0 -38.0 3.10 8
153 28.0 -56.0 10.0 3.10 8
154 44.0 -62.0 -42.0 3.10 8
155 -32.0 -68.0 -58.0 3.10 8
156 -40.0 -66.0 -26.0 3.10 8
157 40.0 -64.0 10.0 3.10 8
158 24.0 -80.0 -38.0 3.09 8
159 34.0 -76.0 -24.0 3.09 8

Built using Nilearn. Source code on GitHub. File bugs & feature requests here.