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8.2.1. Basic Atlas plotting

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8.2.3. Visualizing Megatrawls Network Matrices from Human Connectome Project

8.2.2. Glass brain plotting in nilearnΒΆ

See Plotting brain images for more plotting functionalities.

Retrieve data from Internet

from nilearn import datasets

localizer_dataset = datasets.fetch_localizer_button_task()
localizer_tmap_filename = localizer_dataset.tmaps[0]

Demo glass brain plotting using whole brain sagittal cuts

from nilearn import plotting

plotting.plot_glass_brain(localizer_tmap_filename, threshold=3)
../../_images/sphx_glr_plot_demo_glass_brain_001.png

On a black background (option “black_bg”), and with only the x and the z view (option “display_mode”).

plotting.plot_glass_brain(
    localizer_tmap_filename, title='plot_glass_brain',
    black_bg=True, display_mode='xz', threshold=3)
../../_images/sphx_glr_plot_demo_glass_brain_002.png

Hemispheric sagittal cuts

plotting.plot_glass_brain(localizer_tmap_filename,
                          title='plot_glass_brain with display_mode="lyrz"',
                          display_mode='lyrz', threshold=3)

plotting.show()
../../_images/sphx_glr_plot_demo_glass_brain_003.png

Total running time of the script: ( 0 minutes 2.434 seconds)

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