8.2.2. Glass brain plotting in nilearnΒΆ

See Plotting brain images for more plotting functionalities.

Retrieve data from Internet

from nilearn import datasets

localizer_dataset = datasets.fetch_localizer_button_task()
localizer_tmap_filename = localizer_dataset.tmaps[0]

Demo glass brain plotting using whole brain sagittal cuts

from nilearn import plotting

plotting.plot_glass_brain(localizer_tmap_filename, threshold=3)
../../_images/sphx_glr_plot_demo_glass_brain_001.png

On a black background (option “black_bg”), and with only the x and the z view (option “display_mode”).

plotting.plot_glass_brain(
    localizer_tmap_filename, title='plot_glass_brain',
    black_bg=True, display_mode='xz', threshold=3)
../../_images/sphx_glr_plot_demo_glass_brain_002.png

Hemispheric sagittal cuts

plotting.plot_glass_brain(localizer_tmap_filename,
                          title='plot_glass_brain with display_mode="lyrz"',
                          display_mode='lyrz', threshold=3)

plotting.show()
../../_images/sphx_glr_plot_demo_glass_brain_003.png

Total running time of the script: ( 0 minutes 2.293 seconds)

Generated by Sphinx-Gallery