Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the user guide for the big picture.

8.10.29. nilearn.plotting.view_markers

nilearn.plotting.view_markers(marker_coords, marker_color=None, marker_size=5.0, title=None, title_fontsize=25)

Insert a 3d plot of markers in a brain into an HTML page.

Parameters:

marker_coords : ndarray, shape=(n_nodes, 3)

the coordinates of the nodes in MNI space.

marker_color : ndarray, shape=(n_nodes,)

colors of the markers: list of strings, hex rgb or rgba strings, rgb triplets, or rgba triplets (i.e. formats accepted by matplotlib, see https://matplotlib.org/users/colors.html#specifying-colors)

marker_size : float or array-like, optional (default=3.)

Size of the markers showing the seeds in pixels.

title : str, optional (default=None)

title for the plot

title_fontsize : int, optional (default=25)

fontsize of the title

Returns:

ConnectomeView : plot of the markers.

It can be saved as an html page or rendered (transparently) by the Jupyter notebook. Useful methods are :

• ‘resize’ to resize the plot displayed in a Jupyter notebook
• ‘save_as_html’ to save the plot to a file
• ‘open_in_browser’ to save the plot and open it in a web browser.

See also

nilearn.plotting.plot_connectome

projected views of a connectome in a glass brain.

nilearn.plotting.view_connectome

interactive plot of a connectome.

nilearn.plotting.view_surf, nilearn.plotting.view_img_on_surf