Note

This page is a reference documentation. It only explains the class signature, and not how to use it. Please refer to the user guide for the big picture.

nilearn.reporting.HTMLReport#

class nilearn.reporting.HTMLReport(head_tpl, body, head_values={})[source]#

A report written as HTML.

Methods such as save_as_html, or open_in_browser are inherited from class nilearn.plotting.html_document.HTMLDocument.

__init__(head_tpl, body, head_values={})[source]#

Construct the HTMLReport class.

Parameters:

head_tplTemplate

This is meant for display as a full page, eg writing on disk. This is the Template object used to generate the HTML head section of the report. The template should be filled with:

title: The title of the HTML page.
body: The full body of the HTML page. Provided through the body input.

bodystr

This parameter is used for embedding in the provided head_tpl template. It contains the full body of the HTML page.

head_valuesdict, optional

Additional substitutions in head_tpl. Default={}.

Note

This can be used to provide additional values with custom templates.

get_iframe(width=None, height=None)[source]#

Get the document wrapped in an inline frame.

For inserting in another HTML page of for display in a Jupyter notebook.

Parameters:

widthint or None, optional: Width of the inline frame. Default=None.
heightint or None, optional: Height of the inline frame. Default=None.

Returns:

wrappedstr: Raw HTML code for the inline frame.

get_standalone()[source]#: Return the plot in an HTML page.

open_in_browser(file_name=None, temp_file_lifetime=30)[source]#

Save the plot to a temporary HTML file and open it in a browser.

Parameters:

file_namestr or None, optional: HTML file to use as a temporary file. Default=None.
temp_file_lifetimefloat, optional: Time, in seconds, after which the temporary file is removed. If None, it is never removed. Default=30.

remove_temp_file()[source]#: Remove the temporary file created by open_in_browser, if necessary.

resize(width, height)[source]#

Resize the plot displayed in a Jupyter notebook.

Parameters:

widthint: New width of the plot.
heightint: New height of the plot.

save_as_html(file_name)[source]#

Save the plot in an HTML file, that can later be opened in a browser.

Parameters:

file_namestr: Path to the HTML file used for saving.

Examples using `nilearn.reporting.HTMLReport`#

Decoding of a dataset after GLM fit for signal extraction

Extracting signals of a probabilistic atlas of functional regions

Default Mode Network extraction of ADHD dataset

Simple example of two-session fMRI model fitting

First level analysis of a complete BIDS dataset from openneuro

Voxel-Based Morphometry on OASIS dataset

Simple example of NiftiMasker use

Extracting signals from brain regions using the NiftiLabelsMasker

Understanding NiftiMasker and mask computation

nilearn.reporting.HTMLReport#

Examples using nilearn.reporting.HTMLReport#

Examples using `nilearn.reporting.HTMLReport`#